st_Biwako_Kuroda(1953)

1877/? - 1951/?

Gymnogobius isaza Isaza_Kuroda(1953)

Gymnogobius urotaenia Ukigori_Kuroda(1953)

Rhinogobius sp./spp. (not yet identified) Yoshinobori_Kuroda(1953)

Luciogobius sp./spp. (not yet identified) Nagamimizuhaze_Kuroda(1953)

Odontobutis obscura Donko_Kuroda(1953)

Cottus reinii Kajika_Kuroda(1953)

Channa argus Kamuruchi_Kuroda(1953)

Gasterosteus microcephalus Hariyo_Kuroda(1953)

Anguilla japonica Unagi_Kuroda(1953)

Parabotia curtus Ayumodoki_Kuroda(1953)

? Cobitis minamorii oumiensis Sujishima_Kuroda(1953)

Cobitis taenia/biwae (sp. complex) Shimadojo_Kuroda(1953)

Lefua echigonia Hotokedojo_Kuroda(1953)

Misgurnus anguillicaudatus (Clade B1) Dojo_Kuroda(1953)

Cyprinus carpio Koi_Kuroda(1953)

Carassius cuvieri Gengorou_Kuroda(1953)

Carassius auratus langsdorfii Funa_Kuroda(1953)

Hemigrammocypris rasborella Kawabata_Kuroda(1953)

Ischikauia steenackeri Wataka_Kuroda(1953)

Opsariichthys uncirostris uncirostris Hasu_Kuroda(1953)

黒田長禮 (1953) 琵琶湖産魚類とその分布. 魚類学雑誌 2:271-284

QS947_Saga

2019/11

Candidia sieboldii QS947-W01

Tanakia limbata QUYK-09986

Pseudorasbora parva QUYK-09985

Corbicula fluminea QUYK-09975

QS841

2018/11

Tanakia limbata QUYK-09331

Tanakia limbata QUYK-09330

Carassius auratus langsdorfii QUYK-09329

Carassius auratus buergeri QUYK-09327

Odontobutis obscura QUYK-09322

Tanakia limbata QUYK-09321

Zacco platypus QUYK-09320

Candidia sieboldii QUYK-09319

QS784

2018/9

Tanakia limbata QS784-X03

Candidia sieboldii QS784-X02

Zacco platypus QS784-X01

Acheilognathus rhombeus QS784-W01

Acheilognathus rhombeus QUYK-09210

Acheilognathus rhombeus QUYK-09209

Carassius auratus langsdorfii QUYK-09208

Aphelocheirus nawai QUYK-09207

Rhinogobius kurodai QUYK-09206

Pseudorasbora parva QUYK-09205

Squalidus gracilis gracilis QUYK-09204

Biwia zezera QUYK-09203

QS757

2018/7

Candidia sieboldii QS757-X10

Rhodeus ocellatus kurumeus QS757-X09

Opsariichthys uncirostris uncirostris QS757-X08

Lepomis macrochirus QS757-X07

Carassius cuvieri QS757-X06

Squalidus gracilis gracilis QS757-X05

Pseudorasbora parva QS757-X04

Oryzias latipes QS757-X03

Carassius auratus langsdorfii QS757-X02

Cyprinus carpio QS757-X01

Opsariichthys uncirostris uncirostris QS757-W01

Trachemys scripta elegans QUYK-08979

Carassius cuvieri QUYK-08978

Lepomis macrochirus QUYK-08977

Lepomis macrochirus QUYK-08976

Channa argus QUYK-08975

QS753

2018/7

Silurus asotus QS753-X10

Oryzias latipes QS753-X09

Squalidus gracilis gracilis QS753-X08

Zacco platypus QS753-X07

Rhodeus atremius atremius QS753-X06

Rhodeus ocellatus kurumeus QS753-X05

Acheilognathus rhombeus QS753-X04

Candidia sieboldii QS753-X03

Channa argus QS753-X02

Carassius cuvieri QS753-X01

Tanakia limbata QS753-W01

Biwia zezera QUYK-08954

Candidia sieboldii QUYK-08952

Candidia sieboldii QUYK-08951

QS749

2018/7

Silurus asotus QS749-X06

Candidia temminckii QS749-X05

Pungtungia herzi QS749-X04

Zacco platypus QS749-X03

Pseudogobio esocinus QS749-X02

Carassius cuvieri QS749-X01

? Rhinogobius kurodai QS749-W04

Carassius auratus langsdorfii QS749-W03

Opsariichthys uncirostris uncirostris QS749-W02

Candidia sieboldii QS749-W01

QS746

2018/7

Cyprinus carpio QS746-X08

Pseudorasbora parva QS746-X07

Carassius cuvieri QS746-X06

Carassius auratus langsdorfii QS746-X05

Candidia sieboldii QS746-X04

Acheilognathus rhombeus QS746-X03

Opsariichthys uncirostris uncirostris QS746-X02

Zacco platypus QS746-X01

Carassius auratus buergeri QUYK-08950

Carassius auratus langsdorfii QUYK-08949

Carassius auratus buergeri QUYK-08948

Candidia sieboldii QUYK-08947

Candidia sieboldii QUYK-08946

QS710

2018/6

Zacco platypus QS710-X02

Carassius auratus langsdorfii QS710-X01

Rhodeus atremius atremius QS710-W04

? Rhinogobius kurodai QS710-W03

Squalidus gracilis gracilis QS710-W02

Cobitis striata fuchigamii QS710-W01

Squalidus gracilis gracilis QUYK-08815

Cobitis striata fuchigamii QUYK-08805

Cobitis striata fuchigamii QUYK-08802

Candidia sieboldii QUYK-08801

Cobitis striata fuchigamii QUYK-08799

QS510

2017/10

Odontobutis obscura QS510-W02

Cobitis striata fuchigamii QS510-W01

Candidia sieboldii QUYK-08147

Corbicula sp./spp. QUYK-08146

Bellamya quadrata QUYK-08145

Cobitis striata fuchigamii QUYK-08144

Cobitis striata fuchigamii QUYK-08143

Odontobutis obscura QUYK-08141

Acheilognathus rhombeus QUYK-08142

Cyprinus carpio QUYK-08140

Cobitis striata fuchigamii QUYK-08139

QS454

2017/8

Candidia sieboldii QS454-W01

QS453

2017/8

Candidia sieboldii QS453-W06

Channa argus QS453-W05

Micropterus salmoides QS453-W04

Caridina leucosticta QS453-W03

Cobitis matsubarae QS453-W02

Bellamya quadrata QS453-W01

QS286

2016/12

Candidia sieboldii QS286-X15

Pseudobagrus nudiceps QS286-X14

Rhinogobius kurodai QS286-X13

Tridentiger brevispinis QS286-X12

Cobitis matsubarae QS286-X11

Odontobutis obscura QS286-X10

Tanakia lanceolata QS286-X09

Anguilla japonica QS286-X08

Tanakia limbata QS286-X07

Pseudogobio esocinus QS286-X06

Squalidus gracilis gracilis QS286-X05

Zacco platypus QS286-X04

Carassius auratus langsdorfii QS286-X03

Silurus asotus QS286-X02

Pungtungia herzi QS286-X01

? Sinanodonta lauta QUYK-06662

Pungtungia herzi QUYK-06661

QS285

2016/12

Oryzias latipes QS285-X13

Misgurnus anguillicaudatus (Clade B1) QS285-X12

Rhinogobius kurodai QS285-X11

Anguilla japonica QS285-X10

Cobitis matsubarae QS285-X09

Channa argus QS285-X08

Odontobutis obscura QS285-X07

Tanakia lanceolata QS285-X06

Pseudogobio esocinus QS285-X05

Tanakia limbata QS285-X04

Zacco platypus QS285-X03

Pseudobagrus nudiceps QS285-X02

Carassius auratus langsdorfii QS285-X01

Candidia sieboldii QUYK-06660

Misgurnus anguillicaudatus (Clade B1) QUYK-06659

Rhinogobius kurodai QUYK-06658

? Rhodeus ocellatus kurumeus QUYK-06657

Cyprinus carpio QUYK-06656

Cyprinus carpio QUYK-06655

Cybister tripunctatus orientalis QUYK-06654

QS167

2015/7

Gerris latiabdominis QS167-X02

Pomacea canaliculata QS167-X01

Eretes sticticus QUYK-03474

Fejervarya kawamurai QUYK-03473

Oryzias latipes QUYK-03472

Oryzias latipes QUYK-03471

? Candidia sieboldii QUYK-03470

Candidia sieboldii QUYK-03469

Pseudorasbora parva QUYK-03468

Carassius auratus langsdorfii QUYK-03467

Carassius auratus langsdorfii QUYK-03466

Carassius auratus langsdorfii QUYK-03465

Pungtungia herzi QUYK-03464

Pseudogobio esocinus QUYK-03463

Odontobutis obscura QUYK-03462

Rhodeus atremius atremius QUYK-03461

QS164

2015/7

Eretes sticticus QS164-X05

Gerris latiabdominis QS164-X04

Veliidae Gen. sp./spp. QS164-X03

Guignotus sp./spp. QS164-X02

Elaphe quadrivirgata QS164-X01

Candidia sieboldii QUYK-03435

Oryzias latipes QUYK-03434

Oryzias latipes QUYK-03433

Oryzias latipes QUYK-03432

Carassius auratus langsdorfii QUYK-03431

Fejervarya kawamurai QUYK-03430

Pomacea canaliculata QUYK-03429

? Bellamya quadrata QUYK-03428

Bellamya quadrata QUYK-03427

Silurus asotus QUYK-03426

QS078

2014/7

Silurus asotus QS078-X06

Pomacea canaliculata QS078-X05

Cyprinus carpio QS078-X04

Carassius auratus langsdorfii QS078-X03

Candidia temminckii QS078-X02

Lithobates catesbeianus QS078-X01

Fejervarya kawamurai QUYK-01240

Rhinogobius kurodai QUYK-01239

Rhinogobius flumineus QUYK-01238

? Cobitis striata striata QUYK-01237

Odontobutis obscura QUYK-01236

Pseudogobio esocinus QUYK-01235

Candidia temminckii QUYK-01234

Candidia temminckii QUYK-01233

Zacco platypus QUYK-01232

Carassius auratus buergeri QUYK-01231

Candidia temminckii QUYK-01230

Acheilognathus rhombeus QUYK-01229

Pseudobagrus nudiceps QUYK-01228-2

Candidia temminckii QUYK-01228

QS701

2018/6

Candidia sieboldii Q08795

Rhinogobius nagoyae QS701-X09

Rhinogobius mizunoi QS701-X08

Rhinogobius fluviatilis QS701-X07

Eriocheir japonica QS701-X06

Odontobutis obscura QS701-X05

Candidia temminckii QS701-X04

Macrobrachium formosense QS701-X03

Macrobrachium japonicum QS701-X02

Anguilla japonica QS701-X01

Candidia temminckii QS701-W01

Macrobrachium japonicum QUYK-08794

Candidia temminckii QUYK-08793

Macrobrachium japonicum QUYK-08791

st_Shiga_Ohmi-Hachiman

Rhinogobius kurodai GEDIMAP-P2187, R_sp__OR_Shiga_Ohmi

Silurus lithophilus GEDIMAP-P2176, S_lithophilus_Shiga_Ohmi

Silurus asotus GEDIMAP-P2161, S_asotus_Shiga_Ohmi

Opsariichthys uncirostris uncirostris GEDIMAP-P2140, O_uncirostris_uncirostris_Shiga_Ohmi

Candidia sieboldii GEDIMAP-P2119, Z_sieboldii_Shiga_Ohmi

Ischikauia steenackeri GEDIMAP-P2111, I_steenackeri_Shiga_Ohmi

Squalidus japonicus japonicus GEDIMAP-P2068, S_japonicus_japonicus_Shiga_Ohmi

Squalidus chankaensis biwae GEDIMAP-P2065, S_chankaensis_biwae_Shiga_Ohmi

Hemibarbus barbus GEDIMAP-P2046, H_barbus_Shiga_Ohmi

ROR_01 (cyt-b) [3]

ROR_09 (cyt-b) [1]

Slit_01 (CR) [4]

Slit_05 (CR) [5]

Saso_09 (CR) [1]

Ounc_01 (cyt-b) [2]

Ounc_02 (cyt-b) [2]

Ounc_03 (cyt-b) [1]

Ounc_10 (cyt-b) [1]

Ounc_12 (cyt-b) [1]

Ounc_13 (cyt-b) [1]

Ounc_21 (cyt-b) [1]

Ounc_23 (cyt-b) [1]

Nsie_b03 (cyt-b) [1]

Nsie_b06 (cyt-b) [1]

Nsie_b08 (cyt-b) [2]

Iste_01 (cyt-b) [1]

Sjjap_db01 (cyt-b) [14]

Sjjap_db02 (cyt-b) [5]

Sjjap_db03 (cyt-b) [4]

Tabata, R., R. Kakioka, K. Tominaga, T. Komiya and K. Watanabe (2016) Phylogeny and historical ...moreTabata, R., R. Kakioka, K. Tominaga, T. Komiya and K. Watanabe (2016) Phylogeny and historical demography of endemic fishes in Lake Biwa: the ancient lake as a promoter of evolution and diversification of freshwater fishes in western Japan. Ecology and Evolution 6:2601-2623

st_Shiga_Moroyama

Zacco platypus GEDIMAP-P2152, Z_platypus_Shiga_Moriyama

Candidia sieboldii GEDIMAP-P2120, Z_sieboldii_Shiga_Moriyama

Pseudorasbora parva GEDIMAP-P2053, P_parva_Shiga_Moriyama

Plecoglossus altivelis altivelis GEDIMAP-P2001, P_altivelis_altivelis_Shiga_Moriyama

Zpla_01 (cyt-b) [1]

Zpla_02 (cyt-b) [1]

Zpla_03 (cyt-b) [1]

Zpla_15 (cyt-b) [1]

Zpla_30 (cyt-b) [1]

Zpla_31 (cyt-b) [1]

Zpla_35 (cyt-b) [1]

Nsie_b01 (cyt-b) [7]

Nsie_b02 (cyt-b) [9]

Nsie_b03 (cyt-b) [3]

Nsie_b04 (cyt-b) [1]

Nsie_b06 (cyt-b) [3]

Nsie_b11 (cyt-b) [1]

Nsie_b25 (cyt-b) [1]

Ppar_01 (cyt-b) [1]

Palt_01 (cyt-b) [3]

Palt_03 (cyt-b) [2]

Palt_04 (cyt-b) [1]

Palt_05 (cyt-b) [2]

Palt_06 (cyt-b) [1]

Tabata, R., R. Kakioka, K. Tominaga, T. Komiya and K. Watanabe (2016) Phylogeny and historical ...moreTabata, R., R. Kakioka, K. Tominaga, T. Komiya and K. Watanabe (2016) Phylogeny and historical demography of endemic fishes in Lake Biwa: the ancient lake as a promoter of evolution and diversification of freshwater fishes in western Japan. Ecology and Evolution 6:2601-2623